Re: [Mead] MEAD installation problem

From: radev@umich.edu
Date: Tue Nov 30 2004 - 18:46:50 EST


Are you on Linux?

Can you try installing Text::Iconv directly from the URL as indicated
in section 2.2. of the documentation?

D.

#OU SHIYAN# wrote:
>
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> Dear Sir,=20
>
> According to MEAD documentation, "If you don't have a Perl module
> installed, MEAD's install script will automatically install a copy that
> only it can use." That means that I can install MEAD without external
> modules being installed in advance.=20
> So I execute "Perl Install.PL" to install MEAD directly. Some error
> information is reported during the installation process. For example,=20
> /usr/ucb/cc: language optional software package not installed.=20
> Make: Fatal error: Command failed for target "Iconv.o'.=20
> But finally, it is reported that "MEAD installation successful".=20
>
> But when I summarize the provided example data GA3 using=20
> ./mead.pl GA3
>
> Many errors happen:=20
>
> Can't locate loadable object for module XML: Parser:: Expat in @INC
> (@INC contains: /opt1/mead/bin/../lib /opt1/mead/bin/../lib/arch ...) at
> /opt1/mead/bin/../lib/XML/Parser.pm line 15
> Compilation failed in require at /opt1/mead/bin.../lib/XMl/Parser.pm
> line 16
> Compilation failed in require at /opt1/mead/bin/../lib/MEAD/cluster.pm
> line 16
>
> That means, I have to install the external modules before I install
> MEAD? Or other reasons for the above errors?=20
>
> Thanks a lot
>
> Shiyan=20
> Nanyang Technological University
>
>
>
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> <TITLE>MEAD installation problem</TITLE>
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> <!-- Converted from text/rtf format -->
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">Dear</FONT> <FONT SIZE=3D2 FACE=3D"Courier New">Sir</FONT><FONT =
> SIZE=3D2 FACE=3D"Courier New">, </FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">According to MEAD</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier New">d</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">ocumentation</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">,</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier =
> New">&#8220;</FONT></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">If</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New"></FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I> <FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">you</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New"> =
> don</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8217;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">t have a P</FONT><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">erl module installed, MEAD</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8217;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">s install script will automatically install a copy that only it can =
> use.</FONT></I></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8221;</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New"> =
> That means that I can install MEAD without external modules being =
> installed in advance.</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> </SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">So</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> =
> <FONT SIZE=3D2 FACE=3D"Courier New">I execute</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> <FONT SIZE=3D2 =
> FACE=3D"Courier New">&#8220;</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">P</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">erl =
> Install.PL</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">&#8221;</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New"></FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> <FONT SIZE=3D2 =
> FACE=3D"Courier New">to install MEAD dire</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">ctly</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">.</FONT> <FONT =
> SIZE=3D2 FACE=3D"Courier New">S</FONT><FONT SIZE=3D2 FACE=3D"Courier =
> New">ome</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New"> error i</FONT><FONT =
> SIZE=3D2 FACE=3D"Courier New">nformation</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> <FONT SIZE=3D2 =
> FACE=3D"Courier New">i</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">s reported during the =
> installation process.</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier New">For =
> example,</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> =
> </SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">/usr/ucb/cc</FONT><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">: language optional</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I> <FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">software</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New"></FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I> <FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">package not installed. </FONT></I></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">M</FONT><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">ake:</FONT><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New"> Fatal error: C</FONT><FONT COLOR=3D"#800000" =
> SIZE=3D2 FACE=3D"Courier New">o</FONT><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">mmand</FONT> <FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">failed for target</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I> <FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8220;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">Iconv.o</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8217;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">.</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I> </I></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">But</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> =
> <FONT SIZE=3D2 FACE=3D"Courier New">finally</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">,</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier New">it is reported =
> that</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> =
> <FONT SIZE=3D2 FACE=3D"Courier New">&#8220;</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">MEAD</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier New">i</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">nstallation successful</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">&#8221;</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New">. </FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">But when</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Courier New">I</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Courier New"></FONT> <FONT SIZE=3D2 FACE=3D"Courier =
> New">summari</FONT><FONT SIZE=3D2 FACE=3D"Courier New">ze the provided =
> example data GA</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier New">3 using =
> </FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">./mead.pl GA3</FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Courier =
> New">Many</FONT> <FONT SIZE=3D2 FACE=3D"Courier New">e</FONT><FONT =
> SIZE=3D2 FACE=3D"Courier New">rror</FONT><FONT SIZE=3D2 FACE=3D"Courier =
> New">s</FONT><FONT SIZE=3D2 FACE=3D"Courier New"> happen</FONT><FONT =
> SIZE=3D2 FACE=3D"Courier New">:</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> </SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">Can</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8217;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">t locate loadable object for module XML: Parser:: Expat in @INC =
> (</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">@INC contains: /opt1/mead/bin/.</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">./lib /opt1</FONT><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">/mead/</FONT><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">bin/../lib</FONT><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">/</FONT><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">arch</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New"></FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I> <FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8230;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">) at /opt1/mead/bin/../lib/XML/Parser.pm line =
> 15</FONT></I></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">Compilation failed in require at =
> /opt1/mead/bin</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">&#8230;</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">/lib/XMl/P</FONT><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">a</FONT><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">rser.</FONT><FONT COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier =
> New">pm&nbsp; line 16</FONT></I></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><I><FONT COLOR=3D"#800000" SIZE=3D2 =
> FACE=3D"Courier New">Compilation failed in re</FONT><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">quire at =
> /opt1/mead/bin/../lib/MEAD</FONT></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN><SPAN LANG=3D"en-us"><I><FONT =
> COLOR=3D"#800000" SIZE=3D2 FACE=3D"Courier New">/cluster.pm line =
> 16</FONT></I></SPAN><SPAN LANG=3D"en-us"><I></I></SPAN><SPAN =
> LANG=3D"en-us"><I></I></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">That =
> means, I have to install the</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"> <FONT SIZE=3D2 =
> FACE=3D"Arial">external</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial"></FONT> <FONT SIZE=3D2 =
> FACE=3D"Arial">modules before I install MEAD?</FONT><FONT SIZE=3D2 =
> FACE=3D"Arial"></FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"> <FONT SIZE=3D2 FACE=3D"Arial">Or other reasons for the =
> above errors? </FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Arial">Thanks a lot</FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Arial">Sh</FONT><FONT SIZE=3D2 =
> FACE=3D"Arial">i</FONT></SPAN><SPAN LANG=3D"en-us"></SPAN><SPAN =
> LANG=3D"en-us"><FONT SIZE=3D2 FACE=3D"Arial">yan </FONT></SPAN></P>
>
> <P ALIGN=3DLEFT><SPAN LANG=3D"en-us"><FONT SIZE=3D2 =
> FACE=3D"Arial">Nanyang Technological University</FONT></SPAN><SPAN =
> LANG=3D"en-us"></SPAN><SPAN LANG=3D"en-us"></SPAN></P>
> <BR>
>
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-- 
Dragomir R. Radev                                         radev@umich.edu
Assistant Professor of Information, Electrical Engineering and
Computer Science, and Linguistics, the University of Michigan, Ann Arbor
Phone: 734-615-5225   Fax: 734-764-2475    http://www.si.umich.edu/~radev
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