What bibliometric tool will make my life better

I would like to see some tool that will allow me to manipulate paper references in the following way:

- add a paper in pdf format
- add a reference for which a pdf is not available
- search for papers/references
- manually tag papers by topic and importance
- extract custom bib entries for each topic and export to bibtex and html
- papers can belong to multiple categories
- allow manual and group annotations of papers
- unix based with batch mode capabilities
- incorporate access control
- retrieve papers

I have been unable to find something like this. Any hints?


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